MAGPIE : A Multipurpose Automated Genome ProjectInvestigation Environment for Ongoing Sequencing
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منابع مشابه
Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture.
A system called MAGPIE (Multipurpose Automated Genome Project Investigation Environment) has been designed and implemented to meet the challenges of automated whole genome analysis. The system initiates large numbers of remote and local transactions, each depending on evolving criteria and on changing remote and local conditions. Transactions are requested from different types of remote and loc...
متن کاملUsing Multiple Tools for Automated Genome Interpretation in an Integrated Environment
The year 1995 heralded the sequencing of the rst whole microbial genomes (Refs 1, 2). The end of 1996 will see at least four more full microbial genomes sequenced. The entire yeast genome will also be submitted to the public databases. At this rate, we can expect to have access to the complete genomes of at least 25-30 organisms within ve years. While most problems of automated sequence generat...
متن کاملMAGPIE: A Responsive System for Data Collection and Analysis
The MAGPIE system has been designed and implemented to address the data management and analysis problems that arise during the interpretation of whole microbial genomes. The system consists of a command-driven query-answering interface and two cooperating daemons: (1) an active rule daemon that builds and maintains a knowledge base for a particular genome and (2) an annotated logic programming ...
متن کاملMAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region.
Our challenge in annotating the 2.91-Mb Adh region of the Drosophila melanogaster genome was to identify genetic and genomic features automatically, completely, and precisely within a 6-week period. To do so, we augmented the MAGPIE microbial genome annotation system to handle eukaryotic genomic sequence data. The new configuration required the integration of eukaryotic gene-finding tools and D...
متن کاملMultipurpose robot for automated cycle sequencing.
Paramagnetic beads have the superior advantages of easy separation and resuspension by controlling the magnetic filed. Previously, we have developed Magtration technology to automate paramagnetic bead handling and have built several automated instruments that handle 1-12 samples simultaneously. To achieve more high-throughput sample processing, two types of a 96-arrayed Integrated Magtration Un...
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تاریخ انتشار 1998